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Hindi Research Article, Vegetos Vol: 29 Issue: 3
Molecular Characterization and Management of Aspergillus flavus Link Ex Fries in Groundnut
| Ranganathswamy M1*, Naik ST2 and Adiver SS2 | |
| 1Department of Plant Pathology, College of Agriculture, Jabugam, AAU, Anand, Gujarat, India | |
| 2Department of Plant Pathology, UAS, Dharwad, Karnataka, India | |
| Corresponding author : Ranganathswamy M Department of Plant Pathology, College of Agriculture, Jabugam, AAU, Anand, Gujarat, India Tel: 91-2692-261310 E-mail: rangu.math@gmail.com |
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| Received: July 27, 2016 Accepted: September 08, 2016 Published: September 09, 2016 | |
| Citation: Ranganathswamy M, Naik ST, Adiver SS (2016) Molecular Characterization and Management of Aspergillus flavus Link Ex Fries in Groundnut. Vegetos 29:4. doi:10.4172/2229-4473.1000148 |
Abstract
Molecular Characterization and Management of Aspergillus flavus Link Ex Fries in Groundnut
Thirty one isolates collected from different parts of major groundnut growing areas of Karnataka and one from ICRISAT were identified as Aspergillus flavus by molecular technique using species specific primers. Later a field experiment was conducted at two locations under artificial inoculation and natural infection conditions for the pre-harvest management of A. flavus incidence and thereby aflatoxin. The results indicated that all the treatments are effective in reducing the A. flavus incidence and there by aflatoxin level in the produce. Among all the treatments, T-7 was most effective under both the situations. Under artificial inoculation conditions T-7 recorded minimum incidence of A. flavus (1.00 per cent) and aflatoxin content (2.40 µg/kg) with higher benefit to cost ratio (2.86 ) as compared to control (25.90%, 19.90 µg/kg). In natural conditions also T-7 recorded lowest A. flavus incidence (1.40 per cent) and aflatoxin content (0.0 µg/kg) with highest benefit to cost ratio (2.77). Among all the treatments, T-5 (foliar spray with neem oil @ 5 ml/l) was the least effective under both the conditions. The integrated approach was found best under both the situations...
Keywords: A. flavus; Aflatoxin; Characterization; Integrated management
Keywords |
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| A. flavus; Aflatoxin; Characterization; Integrated management | |
Introduction |
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| Groundnut (Arachis hypogea L.) is one of the premier oilseed crops of the world. It is cultivated in the tropical and subtropical regions (40o N to 40o S) of the world. It is the thirteenth most important food crop of the world and third most important oil seed crop used for vegetable oil production. Groundnut suffers from many major diseases viz., leaf spots, rust, stem rot, root rot, collar rot, bud necrosis and many others. Of late aflatoxin contamination caused by Aspergillus flavus Link Ex Fries and Aspergillus parasiticus Speare has become a serious problem in groundnut since it affects the quality of produce [1]. Of the different types of aflatoxin analogues aflatoxin B1 is the most toxic leading to teratogenicity and liver cancer in human beings. Due to food safety, problems posed by aflatoxins, importing countries have prescribed the standards for groundnut. Maximum of 20 ppb of aflatoxin in exporting material is permissible in international trade (WTO). Groundnut producers in both developing and developed countries with advanced agriculture have found it almost impossible to meet above regulations as Aspergillus spp. can infect and produce aflatoxin at various stages of the cropping period including pre-harvest, post-harvest, and storage [2]. Hence, it necessitates taking the precautionary measures before sowing until it reaches the end users. Aid of molecular technique for accurate identification and exploring the integrated approach will be a best solution to address this problem. In this context, species specific primers used for accurate identification and the different components of integrated management (chemicals, botanicals and biocontrol agents) were screened under in vitro against A. flavus and most effective ones were further tested in the field by applying each component as individually as well as integrated manner. The present paper will through the light on the molecular characterization and management of Aspergillus flavus producing aflatoxin in groundnut. | |
Materials and Methods |
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| Molecular identification of isolates of Aspergillus sp. | |
| DNA extraction: Potato Dextrose Broth (PDB) was used for mycelial growth of fungus from which DNA was extracted. One hundred fifty ml of broth was dispensed in 250 ml conical flasks and sterilized at 121.6 °C at 1.1 kg/cm2 pressure for 15 min. Each flask containing PDB was inoculated with spore suspension (100 μl) of different isolates. The inoculated flasks were incubated for 48 hrs at 27 ± 1°C. After incubation, the mycelial mats were harvested by filtering through sterilized Whatman No.1 filter paper. The harvested mycelial mats were freeze-dried and DNA extraction was performed using CTAB (Cetyl Trimethyl Ammonium Bromide) method [3]. The DNA pellet was rehydrated in 100 μl TE buffer and allowed to re-suspend at 4ºC overnight. | |
| Polymerase chain reaction (PCR) | |
| The Fungal DNA (rDNA) was amplified with the specific primers ASPITSF2 (5’ –GCCCGCCATTCATGG-3’) and ASPITSR3 (5’-CCTACAGAGCGGGTGACAAA-3’) [4]. Primers for amplification were custom synthesized at Bangalore Genie Pvt Ltd, Bangalore and supplied as lyophilised products of desalted oligos. Amplification reaction mixture was prepared in 0.2 ml thin walled PCR tubes containing the 1.0 μl Template DNA (25 ng/μl), 1.0 μl of each Primer (5PM/μl), 1.0 μl dNTPs mix (2.5 mM each), 2.0 μl of 10 x assay buffer with 15 mM MgCl2, and 0.5 μl Taq DNA polymerase (6.0U μl-1). Except template the master mix was distributed to PCR tubes (19 μl/ tube) and later 1 μl of template DNA from the respective isolates was added making the final volume of 20 μl. The PCR was carried out in thermo cycler as follows: Initial denaturation 94 for 5 min, 35 cycles of denaturation at 94°C for 1 min, primer annealing at 55°C for 1 min, and extension at 72°C for 2 min and a final extension at 72°C for 10 min. | |
| Separation of amplified products by agarose gel electrophoresis | |
| The PCR products were resolved using 1.2 per cent agarose in 1X TBE (Tris Borate EDTA) buffer, 0.5 mg ml-1 of Ethidium Bromide and loading buffer (0.25% Bromophenol Blue in 40% sucrose).Electrophoresis was carried at 70 V for 1.0 hr. The gel was observed under UV light and documented using gel documentation unit. | |
| Pre-harvest management of A. flavus incidence | |
| A field experiment was conducted during kharif, 2013 on the preharvest management of A. flavus incidence and there by aflatoxin in Groundnut at Main Agricultural Research Station (MARS), Dharwad, Karnataka and in the farmer’s fields located at Murgod, Soundatti taluk, Belagavi district of Karnataka. The highly susceptible variety GPBD-4 was taken for the experiment (Tables 1 and 2). | |
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Table 1: Details of Experiment. |
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Table 2: Treatment details. |
| Mass multiplication of pathogen and inoculation | |
| A. flavus culture (AF-11-4 from ICRISAT) was inoculated to 1000 ml conical flask containing 500 ml Potato Dextrose Broth and incubated at 27 ± 10 C for 10 days. The culture was filtered through Whatman No. 40 filter paper and conidia were collected by washing the mycelial mat with water. The concentration of conidia was adjusted (1x106 conidia/ml) and spore suspension was applied through spraying at flowering and pod development stage. | |
| Observations | |
| Aspergillus flavus incidence: The harvested kernels were analysed for A. flavus colonization by following rolled towel method and disease incidence in the field was assessed with the formula [5]. | |
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| Aflatoxin quantification: The efficacy of different treatments were analysed by estimating the aflatoxin in the harvested crop by following indirect competitive ELISA [6]. | |
| Molecular characterization of Aspergillus sp. | |
| All the 32 isolates of Aspergillus sp. were amplified by using A. flavus specific primers ASPITSF2 and ASPITSR3 and expected PCR product size of 397 bp was obtained in all the 32 isolates of Aspergillus sp. including standard isolate from ICRISAT (AF-11-4). Primer ASPITSF2 targeting within the ITS 1 region is specific at species level (A. flavus) and primer ASPITSR3 targeting within the ITS 2 region is specific at genus level. Midorikawa et al. [4] designed the Aspergillus flavus-specific PCR primers, ASPITSF2 and ASPITSR3 from ribosomal DNA internal transcribed spacers (ITS 1 and 2) and identified that all the strains isolated from Brazil nut and cashew were Aspergillus flavus. The present results are in line with the Midorikawa et al. [4] report (Plate 1). | |
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Plate 1: Identification of A. flavus isolates by amplification with specific primers at ITS Region |
| Pre-harvest management of A. flavus incidence | |
| Under artificial inoculation at MARS, Dharwad | |
| A. flavus incidence: Field experiment conducted during kharif, 2013 for pre-harvest management of A. flavus incidence at MARS, Dharwad indicated that incidence of A. flavus was lower in all the treatments compared to control. Among the different treatments, T-7 (Seed treatment with carbendazim 25% + mancozeb 50% @ 3.0 g/ kg of seeds + soil application of Trichoderma harzianum @ 1 kg/ 50 kg of FYM + foliar spray with carbendazim 12% + mancozeb 63% @ 0.2 % at pegging stage) recorded minimum A. flavus incidence (1.00 %) as compared to control (25.93 %) followed by T-6. Among the various treatments foliar spray with neem oil @ 5 ml /l (T-5) was least effective (19.44 % incidence) (Table 3). Kumar et al. [7] evaluated an integrated package at ICRISAT, Patancheru, Andhra Pradesh, India during the rainy season in 2001 to demonstrate the effectiveness of improved package vis-a-vis farmers’ practice. In Integrated package the seed infection by A. flavus was very less (2.0 %) compared to farmers’ practice (10.0 %). The results are in comparison with Kumar et al. [7], as integrated management practice was more promisable than individual approach. | |
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Table 3: Pre-harvest management of A. flavus incidence in artificial inoculation conditions at MARS, Dharwad. |
| Aflatoxin contamination: Aflatoxin contamination in the kernels obtained from various treatments ranged from 2.40 to 19.90 μg/kg. Among the different treatments, T-7 (Seed treatment with carbendazim 25% + mancozeb 50% @ 3.0 g/kg of seeds + soil application of Trichoderma harzianum @ 1 kg/ 50 kg of FYM + foliar spray with carbendazim 12% + mancozeb 63% @ 0.2 % at pegging stage) and T-6 (seed treatment with tebuconazole @1 g/kg of seeds + soil application of Trichoderma harzianum @ 1 kg/ 50 kg of FYM + foliar spray with tebuconazole @0.1 % at pegging stage) recorded the least aflatoxin contamination (2.40 μg/kg) and they differed significantly from other treatments. The highest aflatoxin was recorded in control (19.90 μg/kg) (Table 3). | |
| Yield and benefit: Cost ratio (B:C): The result revealed that, all the treatments recorded higher yields compared to control. Among different treatments, highest yield was recorded in T-7 (27.20 q/ha) with a benefit cost ratio of 2.86 followed by T-10 (25.20 q/ha) with B:C. ratio of 2.69 while lowest was recorded in T-5 (17.70 q/ha) with a B:C ratio of 1.97 (Table 3a) | |
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Table 3a: Economics of pre-harvest management of A. flavus incidence in groundnut at MARS Dharwad |
| Under natural conditions in farmer’s field | |
| A. flavus incidence: Field experiment conducted during kharif 2013 for Pre- harvest management of A. flavus incidence in the farmer’s field revealed that the A. flavus incidence ranged from 15.74 per cent (Control T-12) to 1.4 per cent (T-7). All the treatments were effective in reducing the A. flavus incidence. Among all the treatments, T-7 was found most effective with lower A. flavus incidence (1.40 per cent) while T-5 was least effective (Table 4). | |
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Table 4: Pre-harvest management of A. flavus incidence in natural conditions at Farmer�s field, Murgod. |
| Aflatoxin contamination: Aflatoxin contamination in the kernels obtained from various treatments ranged from 0.0 to 11.10 μg/kg. All the treatments were effective in reducing the aflatoxin content compared to control. Among the different treatments, T-7, T-8, T-9, T-10 and T-11 showed nil aflatoxin contamination The highest aflatoxin was recorded in control (Table 4). | |
| Yield and benefit: cost ratio (B:C): The result showed that highest yield (26.30 q/ha) was obtained in T-7 (carbendazim 25% + mancozeb 50% @ 3.0 g/kg of seeds + soil application of Trichoderma harzianum @ 1 kg/50 kg of FYM + foliar spray with carbendazim 12% + mancozeb 63% @ 0.2 % at pegging stage) with a benefit: cost ratio of 2.77. The lowest yield (15.80 q/ha) was recorded in T-12 (control) (Table 4a). | |
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Table 4a: Economics of pre-harvest management of A. flavus incidence in groundnut at Farmer�s field, Murgod. |
| In both the natural and artificial inoculation conditions the A.flavus colonization was lower in treatments compared to control. Among the treatments, the integrated ones showed lower A.flavus incidence compared to individual component application. The treatments in the natural conditions showed lower aflatoxin content compared to artificial inoculation condition. This may be due to lack of drought situation at the fag end of the crop and may also due to lack of sufficient inoculum in the soil which are prerequisite for infection and aflatoxin production. Bruce [8] reported that there is a direct relationship between soil density of Aspergillus flavus and the incidence of groundnut colonization. Arunyanark et al. [9] reported that drought in combination with higher levels of A. flavus inoculum load in the soil resulted in increased kernel colonization (6 to 68%) and subsequent aflatoxin contamination (4 to183 μg/kg). From the present study it was concluded that use of molecular technique is a quick, time saving and aid in accurate identification of A.flavus and integrated approach is best in addressing the pre-harvest management of A.flavus incidence and aflatoxin content in groundnut. | |
Acknowledgment |
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| Author is grateful to the Department of Science and Technology (DST), New Delhi for providing the Financial Assistance during the Ph.D program and ICRISAT for extending the facilities during Research work. | |
References |
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